Not sure if I now what you mean. The file structure of what?
Just put them into the "Script files" field like this:
script1.js;script2.js (Only for Construct 2. In Construct 3 you put every script in a separate line)
There's no multiline text fields in Construct 2 plugin properties, so you have to separate scripts with ;
After the scripts are loaded, they are executed the same way it works when you add scripts to any webpage.
valerypopoff O man this looks amazing, I'm guessing that the file structure has to stay the same?And it automatically just includes all files instead of just one?