I'm sure that by now you've probably realized that the issue lies within Jquery. Something about it makes it only be able to run when hosted on a server. Not exactly sure why, but I'm currently programming a work-around for this, mainly so that I can export from HTML5 in Construct 2 and then rewrite some lines of code to compile apps using CocoonJS. If you'd like, you can PM me and I'll tell you what my results are.
EDIT: My bad, the cr arrays are called within the runtime script, in which case, it doesn't need Jquery at all. There just needs to be some tampering of functions within the runtime.