I don't think there's currently a way to make a build with additional command-line flags, but you can always use a small script or a desktop shortcut to run another executable with additional arguments.
I would caution against changing random undocumented settings via the command-line to solve problems though. It's the software version of putting wallpaper over structural cracks. It could also cause new problems, and in some cases those problems may be worse than the one you are trying to fix. In general such things should only be done on a temporary basis while the root cause issue is identified and fixed.